FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546819
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT23500.4297582929634852No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20680.378187297807867No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20060.3668489939084048No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17090.3125348607125941No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16790.3070485846322092No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13350.24413928557712883No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA11550.2112216290948193No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11010.20134633215012646No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10840.19823744237124166No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9840.17994985543662528No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9690.17720671739643282No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8410.15379860612012383No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG7100.12984186723577637No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6250.11429741834135243No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6170.11283441138658314No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT6000.10972552160769834No Hit
CAGGTCACGCAGACCCACCAGGCGGCAGTTACGTGCTTCGATAC5650.10332486618058262No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC5630.10295911444189026No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5590.10222761096450562No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5580.10204473509515946No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5480.10021597640169783No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)