FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944210

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944210
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546819
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA47660.8715863933038172No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28460.5204647241591824No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26200.47913477768694945No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA23160.42354051340571564No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA22240.4067159334258685No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17210.3147293711447481No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14980.2739480522805535No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11400.20847849105462687No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC10900.19933469758731864No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10150.18561900738635637No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8690.15891913046181644No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC7320.13386513636139197No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6460.11813781159762188No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6380.11667480464285257No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6330.11576042529612175No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6190.11320016312527546No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6150.11246865964789081No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6090.11137140443181381No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5990.10954264573835218No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5850.10698238356750588No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5790.10588512835142891No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5750.10515362487404424No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT5710.10442212139665959No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5600.10241048683385179No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)