FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944212

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944212
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530108
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA35980.6787296173609906No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29100.5489447433353204No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27610.5208372633501098No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16700.31503014480068214No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13720.258815184830261No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12400.23391459853463822No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11110.20957993465482502No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10990.20731624499158663No Hit
ACCTACCTGACGCAGGTACCGCCGGAACGTG10240.1931681845963464No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8270.1560059459581821No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8210.15487410112656289No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8000.15091264421589562No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7920.14940351777373667No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7880.1486489545526572No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG7520.14185788556294188No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6580.12412564986757416No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5550.10469564692477759No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)