FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944218

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944218
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472077
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28230.5979956659612732No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27980.592699919716487No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG20200.42789629657873607No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10280.2177610855856142No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8950.18958771556335088No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8460.17920805292356967No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7890.1671337514854568No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7240.15336481124901236No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7030.14891638440339183No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6640.14065502026152513No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5200.11015152189155582No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4960.10506760549656095No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)