FastQCFastQC Report
Sun 21 May 2023
EGAF00007944223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462355
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13820.2989045214175255No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11570.2502406159769009No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11400.24656378756583147No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10210.22082598868834552No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10120.21887943247072056No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8710.18838338506126245No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6700.14491029620097112No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6220.13452866304030453No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6170.13344724291940174No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6150.13301467487104066No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5720.12371446183127684No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5510.1191724973234852No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT4710.10186977538904089No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)