FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944224

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944224
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462355
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61871.338149257605087No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22450.48555763428534354No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16930.36616885293767776No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11810.25543143255723416No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11380.24613121951747036No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11030.23856127867115093No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9500.20546982297152622No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8710.18838338506126245No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6550.1416660358382628No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6430.13907062754809615No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6310.13647521925792952No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6080.13150068670177678No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5610.12133533756529073No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5330.11527938488823522No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4890.10576288782429086No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)