FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944226

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944226
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467033
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64561.3823434318345813No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22900.4903293771532204No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17030.3646423272017181No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11700.25051762937522615No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11090.23745645382660324No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10110.21647292589602873No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9400.20127057402795945No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7900.16915292923626382No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG7100.1520235186806928No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6510.13939057839595917No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6460.13831999023623598No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5990.128256461534838No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5620.1203341091528864No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5230.11198352150704553No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5060.1083435217639867No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC4760.10191999280564756No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)