FastQCFastQC Report
Wed 31 May 2023
EGAF00007944228

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944228
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526282
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28440.5403946933393123No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17690.33613157964741336No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14030.2665871148927761No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12680.24093546805704927No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11920.22649454094952898No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11510.2187040407994193No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7690.1461193808642515No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7080.1345286367384786No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6920.13148844155794803No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5930.112677233878415No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5870.11153716068571602No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5370.10203655074655794No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)