FastQCFastQC Report
Sun 21 May 2023
EGAF00007944232

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944232
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426067
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62321.4626807520882867No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20370.478093820924878No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16420.3853853971323759No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14850.3485367324857358No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12280.28821758080301924No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11270.26451238889658196No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10840.2544200794710691No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10110.23728662393473327No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8650.2030197128620616No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7600.1783757014741813No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC7120.1671098676968646No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7110.1668751628265038No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6820.16006872158604163No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6240.14645583910511728No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5990.14058821734609814No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5940.13941469299429432No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5470.12838356408733836No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5100.11969948388399008No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5090.1194647790136293No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5020.11782184492110397No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC4750.11148481342136332No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4670.10960717445847717No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4360.10233132347729347No Hit

[OK]Adapter Content

Adapter graph