FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944234

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944234
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475456
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65531.3782558217795127No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28940.6086788262215642No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23690.4982585139318886No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17480.3676470588235294No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16370.34430104993942656No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15300.3217963386727689No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14660.30833557679364654No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12410.261012585812357No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11960.2515479876160991No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9410.19791526450397093No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9200.19349845201238391No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9140.1922365055862162No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8250.17351763359806166No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7720.16237044016691346No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7470.15711233005788128No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6690.14070702651770092No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6600.1388141068784493No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6380.13418696998250101No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5950.12514302059496568No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5800.12198815452954637No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5650.11883328846412707No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5600.11778166644232063No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5150.10831706824606273No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC5140.10810674384170145No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5080.10684479741553372No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5060.10642414860681114No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5000.10516220218064341No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4860.1022176605195854No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)