FastQCFastQC Report
Sun 21 May 2023
EGAF00007944235

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944235
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510422
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT22730.445317795863031No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21580.42278741903758066No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG19850.38889389563929455No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17940.35147387847702494No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17710.3469678031119348No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16050.3144456939551979No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13410.2627237854167728No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13060.255866714209027No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA12820.2511647225237157No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT12800.25077288988327306No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT12660.24803006140017475No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11390.22314868873206875No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG10340.2025774751088315No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10030.196504069181971No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT9680.18964699797422524No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT9550.18710008581134827No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT9540.18690416949112695No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9460.1853368389293565No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9350.18318175940692213No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9040.1771083534800616No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8330.1631982947443488No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7770.1522269808119556No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG7130.13968833631779193No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG7000.13714142415491495No Hit
CGGACGCTCCAGTGCGGTGTTGCTAGAGTGGCTCGGGATCGCCG6370.1247986959809726No Hit
GATGAGCGGGTTGAACGCCTGTTTAACCTTTTTAGGGTGTTTCT6200.1214681185372104No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT6160.12068445325632517No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5760.11284780044747288No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5560.10892947404304673No Hit
GATCGCCGGGGACGGAGTTTCCGGACGAGCAGGGGATTCCCAGG5470.10716622716105498No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5210.10207240283530097No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5160.10109282123419445No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)