FastQCFastQC Report
Sun 21 May 2023
EGAF00007944236

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944236
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510422
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA44280.8675174659399477No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35800.7013804263922794No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28260.5536595209454138No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA22800.4466892101045801No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19870.3892857282797371No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG19790.38771839771796673No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17100.3350169075784351No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG13530.26507478125942846No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13270.2599809569336745No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA12850.25175247148437957No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC12760.24998922460238784No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11680.22883026201848664No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT10980.21511611960299518No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG10270.20120606086728235No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10060.1970918181426349No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9840.19278165909776618No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9730.1906265795753318No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9050.1773042698002829No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9050.1773042698002829No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8540.16731253746899624No Hit
GAACCGGAAGACAAATCCCCGCGTGTTCAGC8180.16025954994102917No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG7270.14243116480089024No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7250.14203933216044765No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC7120.13949241999757064No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA7080.13870875471668542No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6500.1273456081438496No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6160.12068445325632517No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6120.11990078797543993No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5940.1163742942114564No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5750.11265188412725156No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5730.11226005148680897No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5630.11030088828459589No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG5550.10873355772282542No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5420.10618664555994844No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5420.10618664555994844No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5190.10168057019485836No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5140.10070098859375183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)