FastQCFastQC Report
Sun 21 May 2023
EGAF00007944238

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944238
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421185
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58841.3970108147251208No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23060.5475028787824828No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16530.3924641190925603No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16480.3912769922955471No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12430.2951197217374788No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10110.24003703835606682No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9850.23386397901159822No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8240.19563849614777354No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7790.18495435497465484No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7320.17379536308273089No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6150.14601659603262224No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5980.1419803649227774No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5360.12725999263981386No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5070.12037465721713736No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5040.11966238113892945No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4520.10731626244999228No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4400.10446715813716063No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4240.10066835238671842No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)