FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944240

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944240
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469667
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29110.6198008376147355No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18660.3973027698347978No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16710.35578399163662766No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13230.28168894131373934No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12310.26210059467665386No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12100.25762934163992784No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9330.1986513849173989No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9010.19183804695667356No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG7650.16288136062359077No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7290.1552163554177747No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7000.14904176789086737No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6510.13860884413850666No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC6170.13136967255523593No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6120.1303050884988726No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6100.12987925487632726No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5870.1249821682170559No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA5320.1132717435970592No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5250.11178132591815051No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5250.11178132591815051No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5250.11178132591815051No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4870.10369048708978915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)