FastQCFastQC Report
Wed 31 May 2023
EGAF00007944241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426001
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15330.3598583101917601No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC13260.3112668749603874No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10980.2577458738359769No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8180.19201832859547277No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7670.18004652571238097No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7080.16619679296527473No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6430.1509386128201577No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6330.1485912004901397No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5860.13755836253905507No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT5750.13497620897603527No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5590.13122034924800646No Hit
GCCATCGCACTGCGGGTCACCCAGCAGGGCATCAATCAGGGTGC5490.12887293691798846No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5060.11877906389891103No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5010.11760535773390204No Hit
ATAACGCAGGTAAGAGTACACTTCGCGTTCTTCTTCGGTATAAC5010.11760535773390204No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4530.1063377785498156No Hit
TACATCGTACGGGTAACAGTTGGAATAGGCTTTGCTACGTTCAA4530.1063377785498156No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA4470.1049293311518048No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)