FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944242

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944242
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426001
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60381.4173675648648711No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15550.3650226173177997No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG13330.31291006359140006No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11870.27863784357313715No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10560.24788674204990127No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10500.2464782946518905No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9560.22441261874972127No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9170.21525771066265104No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8260.1938962584594872No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7240.16995265269330354No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6220.1460090469271199No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5630.13215931418001364No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA5600.13145509048100826No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5560.13051612554900108No Hit
ATCGTGAAAACCATCACCAACGACCAGATTG5390.12652552458797045No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5310.12464759472395603No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG4940.11596216910288942No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4860.11408423923887502No Hit
GGTCGTATTTGCGATTCTCCGCACCGCATCC4630.10868519087983361No Hit
AACTGCACCCTGATCGACGCACTGCTGGGCG4570.10727674348182281No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4490.10539881361780841No Hit

[OK]Adapter Content

Adapter graph