FastQCFastQC Report
Sun 21 May 2023
EGAF00007944244

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944244
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487379
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30170.6190254401605321No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15920.32664517757227945No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15760.3233623114660254No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11670.23944404662490587No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10990.2254918656733261No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10650.21851577519753623No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8710.17871102365920566No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8390.17214529144669752No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7610.15614131917870896No Hit
ATGTCCGATCACCACTTCCCGGCCTCCCTGC7520.15429470699394107No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC6070.1245437329060136No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6040.12392819551109095No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5750.11797800069350546No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5180.10628279018997536No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)