FastQCFastQC Report
Wed 31 May 2023
EGAF00007944250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456333
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65611.437765842049556No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35760.783638264162355No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22090.4840763214582333No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13340.2923303815415497No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11200.24543480309335508No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8740.191526801699636No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7670.1680790124755387No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7420.16260055704934773No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7270.15931348379363316No Hit
CCGCCGGGTCTGAAGGGTGCAAAAGGTGAAC6920.15164364619696583No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6600.1446312232514414No Hit
GAAGTCTCCATTGCCGAACCGACCACTTACA6580.14419294681734612No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6370.13959104425934568No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG6110.13389345061610708No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5840.12797671875582087No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5650.12381309263191573No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5640.12359395441486809No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5240.11482842573296255No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5090.11154135247724797No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4970.10891169387267632No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4770.10452892953172355No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4750.10409065309762827No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA4710.10321410022943772No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4650.10189927092715187No Hit

[OK]Adapter Content

Adapter graph