FastQCFastQC Report
Wed 31 May 2023
EGAF00007944251

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944251
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432331
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8150.18851296807307363No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6350.14687820211828437No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6340.14664689786298No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5780.13369385956593444No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5610.1297616872257599No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4830.11171995531201787No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC4710.10894430424836525No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4570.10570604467410388No Hit
GGTGGTACGGGTGGAAGAGGAGCGCGCGCTCGGCAGGCTGACGG4370.10107995956801619No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)