FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944252

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944252
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432331
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21590.49938588720216687No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15280.35343290210510003No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11430.26438076381291187No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6970.16121906594715624No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5330.1232851680772371No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5240.12120342977949765No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5160.11935299573706257No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5130.11865908297114941No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4970.11495821488627926No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4810.1112573468014091No Hit
TCCGAACCAGAAATCACTGAACACCGTGACC4650.10755647871653895No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4650.10755647871653895No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)