FastQCFastQC Report
Wed 31 May 2023
EGAF00007944253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426389
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14270.3346709225613231No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12650.2966774471198835No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10870.25493152965953625No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8660.20310092427337478No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6410.15033220838248643No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6160.14446901772794327No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6110.14329637959703462No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6010.14095110333521738No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5600.1313354706617666No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT5560.1303973601570397No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5270.12359605899776964No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5170.12125078273595238No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4900.11491853682904579No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4900.11491853682904579No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4490.10530290415559501No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)