FastQCFastQC Report
Wed 31 May 2023
EGAF00007944254

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944254
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426389
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA29690.6963125221335447No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12630.29620839186752007No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11720.27486637788498297No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11580.27158299111843875No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6810.15971331342975545No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6540.15338106752284886No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6300.14775240449448743No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6150.14423449010176154No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6030.14142015858758084No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5910.1386058270734001No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5720.13414980217594732No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5540.12992830490467625No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5410.1268794457643138No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5260.12336153137158792No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5250.1231270037454062No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5250.1231270037454062No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5200.12195436561449756No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5050.11843645122177167No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4680.10975892905304781No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4660.10928987380068435No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4450.1043647936508681No Hit

[OK]Adapter Content

Adapter graph