FastQCFastQC Report
Sun 21 May 2023
EGAF00007944256

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944256
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407002
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA28170.6921341909867764No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19910.48918678532292226No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12140.29827863253743225No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11340.27862270947071516No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10650.2616694758256716No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6420.15773878261040486No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6400.15724738453373693No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5850.1437339374253689No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5660.13906565569702362No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5600.1375914614670198No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5540.13611726723701603No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5430.13341457781534244No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5260.12923769416366504No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5190.1275178008953273No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4990.12260382012864801No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4910.1206382278219763No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4750.11670704320863289No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4720.11596994609363098No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4590.11277585859528946No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4560.11203876148028757No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4220.10368499417693279No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4140.10171940187026107No Hit

[OK]Adapter Content

Adapter graph