FastQCFastQC Report
Wed 31 May 2023
EGAF00007944281

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944281
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471646
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11730.24870347676011245No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11660.24721931278967701No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8390.17788765302790652No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7720.16368208359659575No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7350.15583721689572264No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7100.1505366312870246No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT6010.12742607803310108No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5830.12360965639483851No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5070.10749587614439643No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)