FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944282

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944282
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471646
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22880.48510959490804545No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14730.312310504064489No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14040.29768088778448243No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12120.25697239030968144No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9610.203754510798353No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7770.16474220071833537No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7630.16177387277746444No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT6230.13209059336875537No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5980.12679000776005733No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5520.11703693024005292No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4890.10367945450613385No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4820.10219529053569838No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4750.10071112656526292No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)