FastQCFastQC Report
Wed 31 May 2023
EGAF00007944284

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944284
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449520
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22230.49452749599572876No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17540.39019398469478556No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17380.38663463249688557No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16680.3710624666310731No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11290.25115678946431746No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10390.2311354333511301No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9860.2193450791955864No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8330.18530877380316782No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7490.16662217476419292No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7250.16128314646734293No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6600.14682327816337426No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6120.13614522156967432No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5870.1305837337604556No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5560.12368748887702438No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5420.1205730557038619No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5370.11946075814201816No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5160.11478910838227442No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5100.11345435130806192No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5010.11145221569674318No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4740.10544580886278697No Hit

[OK]Adapter Content

Adapter graph