FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944290

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944290
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487845
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31160.6387274646660313No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24170.49544424971046136No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8510.1744406522563519No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8490.1740306859760785No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7680.15742705162500384No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6130.12565466490381166No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5200.10659123287109634No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)