FastQCFastQC Report
Wed 31 May 2023
EGAF00007944292

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944292
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459950
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31000.6739863028590064No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23230.5050548972714426No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT20200.4391781715403848No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14090.3063376453962387No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG9790.21284922274160237No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8010.174149364061311No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7440.16175671268616154No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6960.15132079573866725No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6770.14718991194695075No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6530.1419719534732036No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6300.1369714099358626No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5880.1278399826068051No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5660.1230568540058702No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5360.11653440591368627No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5360.11653440591368627No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5320.11566474616806173No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5060.11001195782150233No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4640.10088053049244483No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)