FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944295

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944295
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529512
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA35750.6751499493873605No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA33840.6390790010424693No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG33750.6373793228482074No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT27760.5242562963634441No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17550.3314372478810679No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG15030.28384625844173506No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA13600.2568402604662406No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13540.25570714167006603No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12950.2445648068410159No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12580.23757724093127255No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG11920.22511293417335204No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG11020.2081161522307332No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10950.20679418030186283No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG10930.2064164740364713No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT10900.205849914638384No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG10000.18885313269576517No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG9930.1875311607668948No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9770.18450951064376256No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9690.18299868558219642No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9460.17865506353019384No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG8930.16864584749731829No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8820.16656846303766487No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8140.15372645001435284No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8140.15372645001435284No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7940.14994938736043753No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG7900.1491939748296545No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7510.14182870265451963No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7500.14163984952182387No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG7390.13956246506217046No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG7260.1371073743371255No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG7220.13635196180634246No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7090.1338968710812975No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7010.13238604601973136No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6810.12860898336581608No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6660.1257761863753796No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6620.12502077384459653No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6590.12445421444650924No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6580.12426536131381347No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG6380.12048829865989817No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG6160.11633352974059134No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6070.11463385154632945No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG5980.11293417335206757No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5790.10934596383084802No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5610.10594660744232426No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5590.10556890117693274No Hit
TTCTTCAGTCAGCTGCGGCGGGCCACCGTCATTACCTGCGCTAT5480.10349151671727931No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5330.10065871972684283No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)