FastQCFastQC Report
Sun 21 May 2023
EGAF00007944297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430490
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG14890.34588492183325975No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG14300.33217960928244555No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG13820.32102952449534256No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG10630.24692791934772004No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG9190.21347766498641085No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG8890.2065088619944714No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8240.19140978884526932No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG7930.18420869242026527No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7900.18351181212107132No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7890.18327951868800668No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7760.18025970405816627No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7740.17979511719203697No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7660.17793676972751982No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG7240.16818044553880462No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG7080.16446375060977025No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7070.16423145717670562No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC6130.14239587446862878No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6050.1405375270041116No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5580.12961973565007318No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT5430.12613533415410347No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5070.11777277056377616No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5030.11684359683151757No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4810.11173314130409533No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT4740.1101070872726428No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT4350.10104764338312157No Hit
TGGCTGTTCGTTATCTACCTCGATGATTGCAACGCACGCACCAC4350.10104764338312157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)