FastQCFastQC Report
Wed 31 May 2023
EGAF00007944298

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944298
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430490
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48181.1191897605054706No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC16570.3849102185881205No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC16550.3844456317219912No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG15420.3581964737856861No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG13830.32126181792840713No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC11010.2557550698041766No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG9340.21696206648238056No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9270.215336012450928No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9130.21208390438802296No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9030.20976097005737646No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8960.20813491602592396No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG8670.2013984064670492No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8150.1893191479476875No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8120.18862226764849357No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG8080.18769309391623498No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7850.18235034495574812No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7760.18025970405816627No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG7150.16608980464122278No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6940.1612116425468652No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6330.14704174312992171No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6010.139608353271853No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5700.13240725684684895No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC5680.13194266998071963No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5340.12404469325652163No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5250.1219540523589398No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5150.11963111802829333No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5000.11614671653232363No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC4630.10755185950893169No Hit
GGCCCGGCTCACTCCAAAGAAGTTCCGGCAC4550.1056935120444145No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG4330.10058305651699227No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)