FastQCFastQC Report
Sun 21 May 2023
EGAF00007944299

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944299
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422933
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11330.26789113169225387No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA9540.22556764310186248No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8410.1988494631537383No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7290.1723677272759515No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6810.16101841189975719No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6210.14683176767951425No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5900.1395020014990554No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5790.13690111672534422No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5620.13288156752960872No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5440.12862557426353585No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5420.12815268612286107No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5380.12720690984151156No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5070.1198771436610527No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5000.11822203516869102No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA4890.11562115039497982No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4870.11514826225430506No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4640.10971004863654527No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA4570.1080549401441836No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4440.10498116722979763No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG4400.10403539094844809No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG4270.10096161803406214No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)