FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944302

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944302
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451317
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46781.0365220011654779No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17210.38132842325903965No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8790.1947633259992422No Hit
TTCGGCGGTGGCATCGAAGCACTGGATGGCG8340.18479250726207966No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7420.16440772228832506No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5420.1200929723453803No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5030.11145159610650605No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4570.10125920361962878No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)