FastQCFastQC Report
Sun 21 May 2023
EGAF00007944306

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944306
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503637
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT68081.3517672450594376No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG28250.5609198688738118No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17110.33972881261702376No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG16050.31868190780264355No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13850.27499965252751485No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC12270.2436278510117406No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11880.23588417848569507No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10860.215631496494499No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10450.2074907125568614No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9780.19418748026852672No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC9170.18207558221496833No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA8890.17651602245267922No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC8720.17314057545414654No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8550.16976512845561387No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8280.1644041243991208No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7450.14792400081804952No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7330.14554133234849703No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7110.14117310682098416No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6540.1298554315906099No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6160.1223103147703604No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5490.10900708248202576No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5360.10642585830667724No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5250.10424174554292079No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5160.10245474419075644No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5140.10205763277916437No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)