FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944307

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944307
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517182
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16770.32425722472939894No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12460.24092099106310738No Hit
CAGAGACAGGGTGGAATCGGCGTAAATTGCGTCACGCTGTTTGC11580.22390570437486224No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11230.2171382608056738No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10820.20921068405319598No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10750.20785719533935829No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT9820.18987513099837194No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8540.1651256230881972No Hit
CGGGTGCAGAGTCTGAGCGAAACCGCTGTTCAGGGACTGGGTGA7950.153717646785851No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7260.14037611517802243No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6840.13225518289499635No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6380.1233608284897773No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6320.12220069530648785No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5700.11021265241249695No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5360.10363856437385678No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)