FastQCFastQC Report
Wed 31 May 2023
EGAF00007944308

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944308
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517182
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27930.5400419968212351No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16900.32677084662652606No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14630.2828791411920755No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13850.26779740980931277No Hit
CACGCAGAACTGAAATCCCTGACCGGTGCGG11400.2204253048249939No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11050.21365786125580552No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG10260.19838277434249454No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8960.17324655537122327No Hit
GTCCAGCGTGTTGCAAAACTGCGCGACGAAA8150.15758475739681582No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7650.14791698086940383No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7490.14482329238063196No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6790.13128840524225513No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6750.13051498312006218No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6670.12896813887567626No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6510.12587445038690442No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6120.11833358469552305No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5990.11581996279839593No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)