FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944316

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944316
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434558
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12340.28396669719577133No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10770.2478380331279139No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10450.24047422898669452No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8220.18915771887757216No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6440.14819655834203949No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4870.11206789427418204No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4610.10608480340944132No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)