FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944317

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944317
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552507
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18850.34117214804518314No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG15140.2740236775280675No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11560.20922811837678074No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10460.18931886835822895No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10340.18714695017438693No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9070.16416081606205896No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9000.1628938637881511No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8660.15674009560059873No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8600.15565413650867774No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8110.14678547059132283No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7930.1435275933155598No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7020.12705721375475787No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7000.1266952273907842No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6980.1263332410268105No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6340.1147496773796531No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6080.11004385464799542No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5550.10045121600269317No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)