FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944319

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944319
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507781
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20250.3987939682658469No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17290.3405011215464935No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT16710.3290788745541877No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15230.299932451194511No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14850.29244891006162105No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG13660.2690136101980972No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT11800.23238364570553052No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10600.2087514105490359No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10060.1981169047286133No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9790.19279965181840203No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9630.1896486871308694No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9170.18058966365421314No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9140.17999885777530078No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8930.1758632166229142No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8490.1671980637321995No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8470.16680419314625794No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8240.16227468140792978No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6690.13174971099745755No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5900.11619182285276526No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5790.11402553463008659No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5790.11402553463008659No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5680.11185924640740791No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT5380.10595118761828426No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5280.10398183468857637No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5170.1018155464658977No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)