FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944320

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944320
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507781
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA41990.8269312951843413No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40410.7958155188949567No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20850.4106100858440942No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20710.40785299174250317No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20310.3999755800236716No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19710.3881594624454243No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT17930.35310498029662396No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG14170.27905731013960744No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC11120.21899204578351691No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10520.20717592820526962No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10080.19851077531455488No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10020.19732916355673016No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9510.18728546361521994No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9010.17743869896668052No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8490.1671980637321995No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7440.14651985797026673No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6960.13706696390766887No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6540.12879568160289573No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6160.12131214047000577No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6150.12111520517703497No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5920.11658569343870684No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5770.11363166404414501No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5610.1104806993566124No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5500.10831441113393371No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5440.10713279937610899No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5280.10398183468857637No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)