FastQCFastQC Report
Wed 31 May 2023
EGAF00007944321

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944321
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521305
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCACGGTGCGGGGTCGCCTCACAGGACGGGGTACGGCGGCGCA25210.48359405722177995No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17820.34183443473590314No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14390.276038019969116No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10740.2060214269957127No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10530.20199307507121553No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10140.19451185006857788No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9870.18933254045136724No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT9300.1783984423705892No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG8680.16650521287921657No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8290.15902398787657898No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8000.15346102569513048No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7020.134662050047477No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6770.12986639299450417No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6530.12526256222365026No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6510.12487890965941244No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6160.11816498978525047No Hit
ACGGGCTGCGGATGCAGCCACGGATGCAGAGGTGGTACGAACGC5890.11298568016803984No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5760.11049193850049396No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5540.10627176029387787No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5520.10588810772964004No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5400.10358619234421308No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)