FastQCFastQC Report
Sun 21 May 2023
EGAF00007944322

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944322
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521305
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGCTCTGGGCGCTCGTCGTAAGAAAAAAA26490.5081478213330008No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24800.47572917965490447No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16900.32418641678096316No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14430.2768053250975916No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13930.26721401099164593No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11950.22923240713210116No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11590.2223266609758203No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11170.21426995712682592No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10970.21043343148444768No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10100.19374454494010224No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9530.1828104468593242No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG9530.1828104468593242No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG8720.16727251800769222No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8060.15461198338784396No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7340.14080049107528222No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6890.13216830837993113No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6160.11816498978525047No Hit
ACTCGTCCGAGCCGCCCGGCTACCGTACCGC6010.11528759555346677No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5900.11317750645015874No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5790.1110674173468507No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5710.10953280708989939No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5660.10857367567930483No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)