FastQCFastQC Report
Wed 31 May 2023
EGAF00007944329

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944329
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504885
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9870.195490062093348No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8110.16063063866028898No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7760.15369836695485112No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7730.15310417223724213No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA7240.14339899184962912No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5910.1170563593689652No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5760.11408538578092041No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5410.10715311407548254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)