FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944330

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944330
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504885
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18250.3614684532121176No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13280.2630301949948998No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8620.1707319488596413No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8540.16914742961268409No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8380.1659783911187696No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7570.1499351337433277No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA7390.14636996543767392No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6570.13012864315636233No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5990.11864087861592244No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5310.10517246501678601No Hit
AAAAACGTAAAACACGACTCCTTCAGCGGCA5220.10338988086395912No Hit
GGTGAACAGTGCTTCAGCGGTGGCATTGACG5180.1025976212404805No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)