FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944332

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944332
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494661
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43650.8824225075354637No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40460.8179338981646016No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28360.5733219315854696No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20040.4051259347310582No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16090.3252732679552259No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14450.29211924934450056No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13030.263412721035214No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12380.25027240878096313No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11490.23228028892514269No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10740.2171183901702378No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10100.20418023656605233No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9580.1936679867626516No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8790.17769745340748513No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8770.17729313610735434No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8380.1694089487548038No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7470.15101251159885254No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7140.1443412761466944No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6350.12837074279152794No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6300.12735994954120095No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5980.12089087273910819No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5890.11907144488851962No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5630.11381531998681926No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5610.11341100268668847No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5580.11280452673649226No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5460.11037862293570748No Hit
GCCTTCGAAGCGGTTCTGCCGATGCTGGAAG5410.10936782968538049No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5230.10572897398420332No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5080.10269659423322235No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)