FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944333

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944333
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494413
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19720.3988568261756871No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17470.3533483140613212No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16500.3337290888386834No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14540.29408611828572473No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10400.2103504559952914No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9200.18607924953429622No Hit
CGGTTCGCGCGGCTCACGTGGTACGCGCGGTTCACGCGGAACAC8910.18021370797288908No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8660.17515720662684842No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7840.15857188221183505No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7290.1474475792505456No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC7140.14441367844292122No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG7040.14239107790450495No Hit
AGTGCTGACCACCTTGGTAGAGTGGTTATCTTCAACTTTGGACG7010.14178429774298007No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC6730.1361210162354145No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6650.1345029358046815No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6050.12236733257418393No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5780.11690631112046002No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5710.11549049074356862No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5200.1051752279976457No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5160.10436618778227919No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5160.10436618778227919No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)