FastQCFastQC Report
Sun 21 May 2023
EGAF00007944334

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944334
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494413
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43790.8856967757724817No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA40540.8199622582739532No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20790.4204986519367411No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19090.3861144427836647No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16210.3278635472772763No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12070.24412788498684299No Hit
CCTACCGATGGCCCGCCGCACCGTGGTGGCG9140.18486568921124646No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8840.17879788759599768No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8240.1666622843655001No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7840.15857188221183505No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA7810.15796510205031017No Hit
GAAAAAGCTATCCCTACCCTGGCAGACGCAG7570.15311086075811112No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7490.15149278032737812No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7430.15027922000432836No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7270.14704305914286236No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6890.13935717709688053No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC6660.13470519585852314No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6150.1243899331126002No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5930.1199402119280844No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5750.11629953095893514No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5330.10780460869758685No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5110.10335488751307105No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5010.1013322869746548No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4970.10052324675928828No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4950.10011872665160503No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)