FastQCFastQC Report
Wed 31 May 2023
EGAF00007944335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528457
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21220.4015463888263378No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19720.37316186558225173No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17520.3315312314909255No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15730.29765903375298275No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10750.20342241658261695No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT10090.19093322635521906No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9760.18468863124152013No Hit
CGGTTCGCGCGGCTCACGTGGTACGCGCGGTTCACGCGGAACAC9160.1733348219438857No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8120.153654885827986No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC7930.1500595128837351No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7910.14968105257381395No Hit
AGTGCTGACCACCTTGGTAGAGTGGTTATCTTCAACTTTGGACG7760.14684260024940535No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7410.14021954482578528No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG7240.1370026321914555No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC6810.12886573552815084No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6150.11637654530075295No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6040.11429501359618663No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5830.11032118034201457No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5790.10956425972217228No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5330.10085967259398589No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)