FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944336

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944336
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528457
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA44890.8494541656180162No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22340.42274016618192206No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20700.3917064207683879No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17120.3239620252925025No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14640.2770329468622802No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12870.2435392094342586No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9960.1884732343407316No Hit
CCTACCGATGGCCCGCCGCACCGTGGTGGCG9760.18468863124152013No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8750.16557638559050214No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8490.16065640156152722No Hit
GAAAAAGCTATCCCTACCCTGGCAGACGCAG8360.15819640954703978No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8360.15819640954703978No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA8280.1566825683073552No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8060.15251950489822255No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7860.14873490179901108No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7590.14362568761507558No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC6770.12810881490830853No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6470.12243191025949132No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6450.12205344994957017No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6290.119025767470201No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5950.11259194220154148No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5330.10085967259398589No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5290.10010275197414359No Hit

[OK]Adapter Content

Adapter graph