FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944339

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944339
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497367
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC28970.5824672726578161No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA26480.5324036375553666No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA24260.48776858939173684No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA24240.48736647184071324No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT23270.4678637706160642No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA23070.46384259510582726No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22610.4545938914322824No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16760.33697450775785287No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA16140.3245088636761184No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15260.30681569143107607No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14450.29052993061461657No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13840.27826534530839403No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG13560.27263569959406236No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG11130.22377841714468388No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10570.21251912571602058No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC10300.20709053877720074No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC10270.2064873624506652No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG9510.19120689551176495No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9280.1865825436749925No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9240.18577830857294514No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9030.18155607428719636No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8930.1795454865320779No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8630.17351372326672257No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8600.17291054694018704No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8580.17250842938916333No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8530.1715031355116041No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7650.1538099632665617No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT7560.15200043428695512No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7390.14858243510325375No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6930.13933373142970884No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG6870.13812737877663778No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6800.13671996734805486No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6720.1351114971439601No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6450.12968291020514028No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG6390.1284765575520692No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6340.12747126367450998No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6340.12747126367450998No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5970.12003208898057169No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5950.11962997142954801No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5930.11922785387852432No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG5930.11922785387852432No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5610.11279397306214525No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5540.11138656163356232No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC5450.10957703265395574No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5310.10676220979678991No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5280.10615903347025435No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT5210.10475162204167145No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5160.10374632816411221No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5140.10334421061308852No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)